Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs17742965 | chr3:73023621 | A/G | 2.14E-8 | 490 | 15.83 | 15.93 | 16.37 | KM Plot |
| THCA | rs17759405 | chr18:55355822 | A/G | 9.26E-13 | 490 | 8.83 | 14.3 | 16.37 | KM Plot |
| THCA | rs17771710 | chr8:71962628 | A/G | 7.09E-6 | 490 | 16.3 | 14.4 | 13.83 | KM Plot |
| THCA | rs17785145 | chr11:45048143 | G/A | 3.6E-5 | 479 | 14.97 | 19.23 | 12.1 | KM Plot |
| THCA | rs17787717 | chr10:104695699 | T/G | 6.97E-9 | 488 | 15.27 | 17.63 | 32.1 | KM Plot |
| THCA | rs17794752 | chr14:24701705 | G/C | 4.59E-11 | 481 | 15.83 | 16.9 | 9.75 | KM Plot |
| THCA | rs17806303 | chr17:30831628 | C/T | 4.08E-13 | 490 | 7.77 | 16.37 | 15.75 | KM Plot |
| THCA | rs17809101 | chr7:29539326 | C/T | 9.07E-6 | 490 | 15.87 | 15.93 | 20.02 | KM Plot |
| THCA | rs1782688 | chr10:7896777 | G/A | 0.000132 | 476 | 14.93 | 16.83 | 17.77 | KM Plot |
| THCA | rs17833752 | chr14:59621080 | A/G | 4.25E-10 | 490 | 15.9 | 16.32 | 6.83 | KM Plot |
| THCA | rs17833798 | chr14:59683581 | A/G | 0 | 488 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs17833876 | chr14:59734171 | T/C | 1.6E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs17833888 | chr14:59739970 | A/G | 1.41E-8 | 489 | 16.4 | 12.62 | 5.45 | KM Plot |
| THCA | rs17833930 | chr14:59764790 | G/A | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs17833942 | chr14:59765908 | A/G | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |